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Pull requests: COMBINE-lab/salmon
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build(cli): add jemalloc/snmalloc diagnostic features and document the allocator choice
#1129
opened Aug 15, 2026 by
BenjaminDEMAILLE
Contributor
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test(map): bench the alignment kernel with divan instead of a hand-rolled loop
#1128
opened Aug 14, 2026 by
BenjaminDEMAILLE
Contributor
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perf(deps): hash with foldhash instead of ahash
#1126
opened Aug 14, 2026 by
BenjaminDEMAILLE
Contributor
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feat(quant): make --writeMappings/--writeBam a complete SAM/BAM (qualities, real CIGARs, NM/MD, read groups, unmapped reads, spliced genome output)
#1123
opened Aug 12, 2026 by
BenjaminDEMAILLE
Contributor
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feat(gpu): optional GPU backend for selective alignment (--gpu, deterministic, off by default)
#1041
opened Jun 30, 2026 by
BenjaminDEMAILLE
Contributor
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ci: publish a Debian/Ubuntu apt repository on each release
#1036
opened Jun 21, 2026 by
BenjaminDEMAILLE
Contributor
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Performance fix: don't let boost promote doubles to long doubles
#968
opened Oct 23, 2024 by
dslarm
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