COMBINE lab

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1. salmon salmon Public

   🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

   Rust 925 188

2. alevin-fry alevin-fry Public

   🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.

   Rust 215 22

3. oarfish oarfish Public

   long read RNA-seq quantification

   Rust 121 8

4. pufferfish pufferfish Public

   An efficient index for the colored, compacted, de Bruijn graph

   C 112 22

5. cuttlefish cuttlefish Public

   Building the compacted de Bruijn graph efficiently from references or reads.

   Rust 97 14

6. RapMap RapMap Public

   Rapid sensitive and accurate read mapping via quasi-mapping

   C++ 90 23