Operon prediction fails at Gene data extraction step

[alexweisberg]

I am looking to run MetaRon on my previously annotated genome assemblies. I was able to get it somewhat start running, however it fails with the test data at the data extraction step:

metaron -p op -n testrun -o ./ -i ERR022075 -j ERR022075_scaffold.fa -t 2
All parameters checked
('Sample name: ', 'testrun')
('OUTPUT DIRECTORY: ', './MetaRon_testrun')
config_file_check start
/homedirectory/.local/lib/python2.7/site-packages/metaron-2.0-py2.7.egg/EGG-INFO/scripts
config_file_check completed

********************************** METAGENOMIC OPERON PREDICTION **********************************

Formatting assembly file
Gene data extraction
PRODIGAL
Extracting sequence information...
Number of entries for each gene are not equal, please correct the data and run again

When I add a few print statements, it appears that the regular expression ("tmp1 = re.compile('(?P<file_name......") in the data_extraction function is not matching the prodigal output table, and therefore several fields are not being populated.

I've attached a zip file of the input files and the resulting output from this run.
metaronexample.tar.gz

Thanks!