bam

C library for high-throughput sequencing data formats

Syntax highlighting for computational biology

viral-ngs: command line tools and wrappers for processing raw viral genomic data

A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster too

Learning the Sequence Alignment/Map format

verifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.

A DNA Sequence Alignment/Map (SAM) library for Clojure

Simple pure Python SAM parser and objects for working with SAM records

Frequently used commands in bioinformatics

My bioinfo toolbox

pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)

Fast sequencing data quality metrics

Bioinformatics library in Kotlin

Identify which human reference genome was used to align a BAM/SAM/CRAM file

Lightweight single-html-file-based Genome Segments playground for Visualize genome features cluster(gene arrow map or other features), add synteny among genome fragments or add crosslink among features, add short(PE/MP)/long reads(pacbio or nanopore) mapping or snpindel in vcf(not support complex sv yet), support all CIGAR of sam alignment, dire…

SQL-like query language for the SAM/BAM file format

Parse and process SAM and BAM formatted files

Tools for querying and analysis of genomic data

pythonic wrapper for htslib

EE7207 Neural & Fuzzy Systems