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Fix pytest for strict nextflow syntax#4261

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mashehu merged 12 commits into
nf-core:devfrom
mashehu:fix-pytests
May 7, 2026
Merged

Fix pytest for strict nextflow syntax#4261
mashehu merged 12 commits into
nf-core:devfrom
mashehu:fix-pytests

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@mashehu mashehu commented May 5, 2026

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@mashehu mashehu marked this pull request as draft May 5, 2026 11:36
@mashehu mashehu changed the title bump to 4.1.0dev Fix pytest for strict nextflow syntax May 5, 2026
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codecov Bot commented May 5, 2026

Codecov Report

❌ Patch coverage is 67.27273% with 18 lines in your changes missing coverage. Please review.
✅ Project coverage is 78.27%. Comparing base (b0eef1d) to head (52c9206).

Files with missing lines Patch % Lines
nf_core/pipelines/list.py 57.89% 16 Missing ⚠️
nf_core/pipelines/containers_utils.py 66.66% 2 Missing ⚠️

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@mashehu mashehu force-pushed the fix-pytests branch 2 times, most recently from e461e6b to 0a30351 Compare May 6, 2026 12:13
@mashehu mashehu marked this pull request as ready for review May 6, 2026 12:15
Comment thread nf_core/pipelines/download/download.py Outdated
Comment thread nf_core/pipelines/list.py
@mashehu mashehu merged commit 2936097 into nf-core:dev May 7, 2026
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2 participants