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Dev nf amp illumina 1.0.3 patch#177

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Dev nf amp illumina 1.0.3 patch#177
bnovak32 wants to merge 3 commits intonasa:DEV_NFAmpIllumina_1.0.3_patchfrom
bnovak32:DEV_NFAmpIllumina_1.0.3_patch

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  • Regularize indentation/spacing in code blocks
  • Add note at top about tech_type and assay suffixes.

- Replaced all instances of "assay_suffix" with the suffix used in OSDR
  (_GLAmpSeq)
- Removed reference to output_prefix since it will no longer be used in
  OSDR
- added <tech_type> prefix to warning/failure files where the
  output_prefix was used to specify the tech_type.
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