sped up protein and gene typeahead

[matthewberry]

Thanks to @cs2018ncsa !

[Copilot]

Pull Request Overview

This PR aims to speed up typeahead queries for protein and gene names by switching to optimized materialized views.

• Updated protein name query to use predictions_uniprot_annot_mv02 with the protein_name_lower column.
• Updated gene name query to use predictions_uniprot_annot_mv03 with the gene_name_lower column.

Comments suppressed due to low confidence (1)

app/db/queries.py:171

• Verify that the MV tables (predictions_uniprot_annot_mv02 and predictions_uniprot_annot_mv03) are properly indexed on the lower-case columns to ensure optimal performance with the LIKE queries.

        query = f"""SELECT DISTINCT gene_name FROM cleandb.predictions_uniprot_annot_mv03 WHERE gene_name_lower LIKE LOWER($1) ORDER BY 1 ASC"""

[Copilot]

Consider using an explicit column name in the ORDER BY clause (e.g., ORDER BY protein_name) instead of the column index to improve clarity and maintainability.

Suggested change

	query = f"""SELECT DISTINCT protein_name FROM cleandb.predictions_uniprot_annot_mv02 WHERE protein_name_lower LIKE LOWER($1) ORDER BY 1 ASC"""
	query = f"""SELECT DISTINCT protein_name FROM cleandb.predictions_uniprot_annot_mv02 WHERE protein_name_lower LIKE LOWER($1) ORDER BY protein_name ASC"""