Galaxy Charts Plugins

This repository contains browser plugins built with Galaxy Charts for the Galaxy Project.

Galaxy provides an extensible plugin system for exploring, interpreting, and presenting scientific data.

Galaxy Charts provides the shared framework and runtime for building browser plugins, while galaxy-visualizations contains the plugins built with it.

Each plugin is self-contained, integrates with Galaxy datasets and provides its own interactive capabilities.

Adding Plugins

New plugins can be added using Galaxy Charts and contributed to this repository.

Galaxy Charts supports plain JavaScript, Vue, React, and other frameworks, with optional components for building configuration interfaces.

For development guides, plugin configuration, and runtime APIs, see the Galaxy Charts documentation.

Contributions of new plugins, improvements, and bug fixes are welcome.

Available Plugins (57)

Logo	Name	Description	Package
	AI Research Assistant	powered by Olit
	Bar, Line and Scatter	Basic Diagrams from http://plotly.com
	Box Plot	Box Plot from http://plotly.com
	Cytoscape	Graph viewer from http://js.cytoscape.org
	Editor	Manually edit text content
	Embedding Atlas	Interactive embedding with clustering and search
	FITS Graph	Displays FITS Tables
	FITS Image Viewer	Aladin Astronomical Images
	H5Web	HDF5 data visualization and exploration
	Heatmap	Renders a heatmap from matrix data provided in 3-column format (x, y, observation).
	Heatmap Matrix	Renders a heatmap from a CSV matrix with first row and column as labels
	Histogram	based on Plotly
	HIV-TRACE Viewer	Browse Transmission Clustering results
	HyPhy Vision	Interactive HyPhy Viewer
	Image Annotate	Display and Annotate Images
	Integrative Genomics Viewer	Explore Genomic Data
	JSON/YAML Viewer	Interactive viewer for JSON, YAML, and JSON-LD data
	JupyterLite	Pyodide-based Jupyter Notebooks
	Katex	TeX math equation rendering
	Kepler.gl	Geospatial analysis tool for large-scale data sets
	LocusZoom	Genome-Wide Association Study Plot
	Markdown Viewer	Read Markdown documents as formatted text
	Media Player	Audio and Video Player
	Molstar Viewer	Complex Biomolecular Structures
	Multiple Sequence Alignment	Large-scale Sequence Alignment Browser
	Multiple Sequence Alignment and Sequence Logo	Advanced Multiple Sequence Alignment Viewer
	MVP Application	Mass Spectrometry
	NGL Viewer	Display Molecular Structures of Proteins, DNA and more
	Niivue	Interactive viewer for medical and neuroimaging data
	Nora	Medical Images and Annotations
	OpenLayers map	Display Geospatial Data on a Map
	OpenSeadragon	High-resolution Zoomable Images
	PCA 3D Plot	Principle Component Analysis
	PDF Viewer	Read PDF documents page by page
	Phylogenetic Aequatus	Gene Structure and Homology
	Phylogenetic Tree	Phylogenetic Tree Browser
	Pie Chart	Pie Chart from http://plotly.com
	Rerun.io	Spatial and Embodied AI
	RMSX Flipbook	Renders RMSX Flipbook Manifests
	RNA ChiRAViz	ChiRA tool for chimeric read data
	RNA Structure Viewer	2D-Structures from Dot-Bracket Notation
	RustGIS	Explore geographic data and LAS/LAZ point clouds
	Sequence Viewer	Visualize DNA, RNA, and protein sequences using SeqViz
	SmilesDrawer	Visualize molecular structures from SMILES notation
	Surface Plot	Surface Plot from http://plotly.com
	Tabulator	Table Viewer
	Tiff Viewer	Tiff Image Viewer
	Transition System	Interactive Flow Graph Diagram
	Unipept Taxonomy Viewer	Interactive Tree, Sunburst and Map Diagrams
	vaRRI	Visual annotation of RNA-RNA interactions
	Venn Diagram	Area proportional Venn and Euler Diagrams
	VIntent	Intent driven Charts
	Vitessce	Visual integration tool for exploration of experiments
	Vizarr Viewer	Display Zarr-Images like OME-Zarr
	VTK	Visualization Toolkit
	WARC Explorer	Explore archived web records, headers, and payloads
	WebR	R in the Browser.	Not published