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Add the new transmission function for 3w TS
… the electron suseptibility
Modified looping structure to allow for initialization based on full previous runs
- Updated defaults.yaml and inputs.yaml for 1D configurations, adjusting parameters for ion and electron fitting ranges, smoothing methods, and optimizer settings. - Enhanced the base.py distribution function to support different smoothing types (butterworth and hanning). - Modified fitter.py to validate input configurations and ensure proper ordering of lineout and fit ranges. - Refactored loops.py to implement a new optimization loop using Optax, allowing for more flexible fitting routines. - Introduced multirun_angular_optax function for batch processing of angular Thomson scattering data. - Updated loss_function.py to store auxiliary values during loss computation. - Adjusted evaluate_background.py and lineouts.py to improve background processing and lineout calculations. - Cleaned up postprocess.py to streamline data processing after fitting.
…nverse-thomson-scattering into postprocessor_revamp
…s forward model bug, fixed input checker bug, fixed handling of m for arts
- Updated input parameters in YAML files for better clarity and consistency. - Enhanced the `smooth1d` function in `base.py` to include additional convolution methods. - Modified `angular_optax` function to track exit conditions and improve state saving. - Adjusted plotting functions to handle zero data cases and updated log scaling. - Ensured compatibility of distribution functions with new parameter structures.
…nverse-thomson-scattering into postprocessor_revamp
modified spherical harmonic code to work for arbitrary order
…nverse-thomson-scattering into postprocessor_revamp
…ction for 3w and 4w data
added 22 commits
November 10, 2025 15:40
Started work on a simpler lineout background algorithm to prevent issues at 3 and 4w
…ocessing - Added background subtraction option in defaults.yaml and inputs.yaml. - Adjusted fitting ranges and parameters in inputs.yaml for improved accuracy. - Enhanced loss function calculations to use amplitude norms. - Introduced new interactive forward pass functionality in calc_vs_data.py. - Updated ThomsonScatteringDiagnostic to handle new spectral types. - Refined data processing in evaluate_background.py and postprocess.py.
…ndling and background subtraction
…tering into flux-work
…and common domain definition. Switched data visualizer to use shading instead of lines to denote ROI, and added a background comparison plot
- Moved spectrum loading options from `other.extraoptions` to `data` in various configuration files. - Updated references in the codebase to reflect the new configuration structure. - Ensured that fitting options for IAW and EPW are disabled if the corresponding spectrum is not loaded. - Cleaned up redundant code and improved consistency across configuration files. - Updated tutorial and input docs
- Created new documentation files for `tsadar.utils.process.warpcorr`, `tsadar.utils`, and `tsadar.utils.vector_tools` to enhance module visibility. - Updated `getting_started.rst` to improve clarity and fix references to background algorithms. - Refined input documentation for electron, ion, and general parameters in `inputs.rst`. - Removed obsolete `spectrum.rst` file to clean up documentation. - Refactored `load_ts_data.py` to handle CCD size and improve error handling for fiducial timing. - Adjusted calibration values in `calibration.py` for improved accuracy. - Enhanced `prepare.py` to include CCD size in data loading. - Updated various functions in `plotters.py` and `lineouts.py` to streamline plotting and background selection processes. - Improved Butterworth filter documentation in `base.py` for better clarity on parameters and returns.
Updated examples and example docs
…ching requirements for the forward model tests
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