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_cal_hessian_ext_graph called torch.autograd.functional.hessian, which with
vectorize=False evaluates one Hessian row per second-order backward pass: for
DPA-4 that is 3*nloc sequential passes, each far too small to keep the GPU
busy.
Replicate the structure along the frame axis the carry-all graph already has,
so one forward and one first-order backward build a graph that every chunk of
seed vectors reuses, and each second-order backward returns `batch` rows at
once. Frames are independent, so the replicated energy is a sum of independent
terms and its Hessian is block diagonal -- the result is exact, not an
approximation, and no vmap is involved, so custom autograd Functions without a
batching rule keep working.
Measured on one H20, float64, TF32 off, DPA-4 from examples/water/dpa4:
natoms B=1 (old) B=24 speedup max|H_B - H_1|
16 2.876 s 0.264 s 10.9x 8.3e-17
32 6.837 s 0.613 s 11.2x 1.2e-16
Peak memory grows with the batch: at 32 atoms 28.3 GiB (B=1) -> 34.6 GiB
(B=24). DP_HESSIAN_HVP_BATCH tunes the trade-off; 1 restores the previous
behaviour exactly.
Batching the Hessian-vector products needs a batch size, and there is no good
fixed one. Peak memory is linear in it while the speedup is not: batching
recovers kernel-launch overhead, which stops mattering once a single
Hessian-vector product already saturates the device. Measured on one H20 with
DPA-4.0.1-Pro-MPtrj in eval mode, float32, TF32 off, over 18 points spanning
54 to 19008 neighbour pairs and 8 to 512 atoms,
peak(MiB) = 782 + [4.50 + 3.27*(B-1)]*edges + [10.9 + 7.96*(B-1)]*natoms
fits every measurement to 0.2%, while the speedup falls from 5.06x at 72 edges
to 1.24x at 5832. A fixed batch of 8 would cut what fits on a 96 GiB card at
fcc-solid density from ~381 atoms to ~63, and buy 1.2x on the systems that
large: it would turn systems that ran into systems that do not.
So size it per call, as DP_INFER_BATCH_SIZE already does for inference batches.
One Hessian-vector product is run to measure what a replica costs, the batch
becomes what the free memory affords, and it is capped at 8, where the speedup
has flattened on every system measured. The measurement covers a whole product
while each step past the first adds only its marginal share, so the estimate
reads high and the batch comes out conservative. That is the direction to err:
a batch that does not fit is recovered by halving and retrying, and nothing
recovers the time lost to one that was too small. Reaching 1 hands over to the
original one-row-at-a-time path, so the fallback bottoms out in exactly the
code a user who asked for 1 would take.
An explicit DP_HESSIAN_HVP_BATCH is used as given, including above the cap. The
out-of-memory fallback still applies to it, because halving changes how the
Hessian is computed and not what it is, and the alternative is ending a run
that could have finished. Without CUDA there is no allocator to size against
and no recoverable out-of-memory error to catch, so the automatic choice is 1.
This also corrects the measurements the comments quoted. They were taken with
the model left in training mode, where this checkpoint's use_amp silently
enables a bfloat16 autocast, so they described the bf16 path and overstated
peak memory by roughly 18x. Likewise the equivalence claim: against the
DPA-4.0.1-Pro-MPtrj checkpoint in float64 the two routes agree to 2.8e-14
relative RMS, not the 1e-16 measured on the smaller example model.
The batched Hessian-vector product path was reached only incidentally. test_dpa2_graph_lower exercises it, but only because the batch it happens to get exceeds 1: a batch of 1 would turn that into coverage of the unbatched path alone, without any test failing. Nothing treated the batch as the object under test, so no test compared one batch against another, and none asserted which branch had run. Add a float64 DPA-1 model that meets the graph-route gate (mixed types plus graph lower) and check, for batches 2, 3, 4, 8 and 16, that the Hessian matches the one produced with a batch of 1. 3*nloc is 15, so 2, 4, 8 and 16 leave a partial final chunk and cover the zero-padding branch, while 3 divides evenly and 16 exceeds 3*nloc and is clamped. A counter over the three implementations asserts that batches of 0 and 1 take the unbatched path, that the larger ones take the batched helper, and that the dense route neither sees the setting nor changes with it -- the dense Hessian doubles as an independent cross-check, since it shares no code with the graph wrapper. Cover the automatic choice too: that it stays within [1, cap] whatever the free memory, that it never shrinks as memory grows (with both ends pinned, so monotonicity cannot pass vacuously), that it stays at 1 without CUDA without running the probe, and that the probe prices one Hessian-vector product rather than the whole Hessian. Cover the fallback by making the helper refuse batches above 2 and asserting the retry walks 8, 4, 2 and still returns the unbatched answer, and by making every batch fail and asserting it lands on the original path. Verified non-vacuous by mutation. Of the 23 tests, these many fail when the implementation is broken in each way: dropping the trim that discards padded rows, 10; shifting the seed vectors by one row, 8; letting a batch of 1 enter the batched helper, 6; removing the batch cap, 5; ignoring free memory and always taking the cap, 1; retrying at 1 instead of halving, 1; running the probe without CUDA, 1; ignoring max_rows so the probe prices the whole Hessian, 1.
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Inline comments:
In `@deepmd/pt_expt/model/make_model.py`:
- Line 434: Update the batching logic around coord_flat so it preserves the
coordinate graph when create_graph is true and detaches only when create_graph
is false; use the resulting source for the reshape, expand, and contiguous
operations.
- Around line 458-473: Update the Hessian computation around the initial total
gradient and HVP loop to support constant and linear outputs: guard
total.requires_grad, use allow_unused=True, and replace missing gradients with
zeros_like(x); before each second derivative call, guard grad.requires_grad,
emit zero HVP rows when false, and materialize unused second gradients as zero
tensors. Add coverage for constant-output and linear-output cases in the
existing Hessian model tests.
- Line 460: Update the HVP seed construction around the helper containing eye
and the rows loop to avoid allocating the full ndof × ndof identity. Build each
current nb × ndof seed block directly, populate only the count of requested
diagonal entries while preserving row order, and retain the existing batch-shape
padding and final-chunk behavior.
- Around line 642-651: Wrap the automatic batch-one probe in the hvp_batch
initialization path around _auto_hvp_batch with a torch.OutOfMemoryError
handler; on failure, clear the CUDA cache and set hvp_batch to 1 so the
subsequent computation uses the unbatched functional Hessian fallback.
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I reviewed the full current 4-file diff and the existing review threads. The main batching idea is sound, but the current head still has blocking behavioral regressions already captured by the unresolved inline comments, so I am not duplicating those comments.
The two correctness issues are independently reproducible from the PyTorch autograd contract:
_hessian_graph_batched_hvp()unconditionally detachescoord_flat. Whencreate_graph=True(the training path), the returned Hessian is therefore disconnected from the caller coordinates, unliketorch.autograd.functional.hessian(..., create_graph=True). This drops higher-order coordinate derivatives.- The new direct
torch.autograd.gradsequence does not preserve the oldfunctional.hessian(strict=False)behavior for coordinate-independent or linear outputs. The old path returns an all-zero Hessian; the new path can raise becausetotalor the first derivative has no differentiable graph.
The automatic batching path also needs the existing probe fixes before it is robust: the probe allocates a full ndof x ndof identity even for max_rows=1, and a probe OOM currently escapes before _hessian_graph_row_block() can fall back to the unbatched implementation.
Please address those unresolved inline findings and add focused regressions for higher-order graph preservation plus constant/linear outputs. Exact-head Test Python and Test C++ are also still running at the time of review; the completed CUDA/build/CodeQL/package workflows are green.
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The automatic batch choice returns 1 immediately on a non-CUDA device and never runs the probe -- there is no allocator to size against and no recoverable out-of-memory error to catch, which is what test_auto_batch_is_one_without_cuda asserts. The test that checks the probe prices a single Hessian-vector product therefore cannot pass there, and it was missing the skip its two sibling tests already carry. On CPU: 1 failed, 14 passed, 8 skipped -> 14 passed, 9 skipped. On CUDA: 23 passed, unchanged.
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Re-reviewed the new head because the SHA changed. The only delta from the previously reviewed 973ad0cef5de08ca82f0627bedacf4398dc1742b is the CUDA-only skip for test_probe_prices_one_product_not_the_whole_hessian; that test-only correction is reasonable, but it does not address the four existing merge-blocking findings in the implementation. The current head still unconditionally detaches coord_flat in the batched HVP path when create_graph=True, still does not materialize zero Hessians for constant/linear coordinate dependence like the previous functional.hessian(strict=False) path, still allocates a full ndof × ndof identity even for the one-row memory probe, and still lets an OOM from the automatic probe escape before the batch-halving/unbatched fallback can run. Those issues remain attached as exact-line unresolved inline threads, so I am not duplicating them.
Exact-head Test CUDA, Build C++, Build C library, CodeQL, and package/PyPI are green; Test Python and Test C++ are still in progress. Please address the existing blocking threads and add the corresponding regressions before requesting another review.
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Review found four problems with the batched Hessian-vector products, all of them in how the batched path differs from the `torch.autograd.functional.hessian` call it replaces. 1. `create_graph` no longer detaches the coordinates. The batched path built its replicas from `coord_flat.detach()` whatever the caller asked for, so with `create_graph=True` the Hessian lost its dependence on the input coordinates. The parameter path was unaffected -- training on Hessian labels still trained -- which is what made the loss silent. `functional.hessian` keeps the input in the graph in this case (`_grad_preprocess`), and now so does this. 2. A constant or linear coordinate dependence yields zeros instead of raising. `functional.hessian` materialises the zero block under its default `strict=False`; differentiating a constant first derivative again raises instead, so a legitimate model became a crash. 3. The memory probe no longer builds an `ndof x ndof` identity. Seeds are now cut one block at a time. The identity is the allocation batching exists to avoid, and building it to decide the batch both risked the out-of-memory error being measured for and inflated the measurement, biasing the chosen batch too small. 4. An out-of-memory error from the probe falls back to one row at a time. Pricing a product is itself a product, so it can be the allocation that does not fit; that escaped before the halving path could run, ending a job that the unbatched route might have completed. Each fix has a test that fails without it: reverting any one of the four fails exactly its own test and leaves the other three green.
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Re-reviewed the new head. Three of the four previous blockers are fixed correctly: create_graph=True now preserves the coordinate graph, seed blocks no longer allocate the full ndof² identity, and probe OOM now routes to the unbatched fallback. The linear-output zero-Hessian case is also handled.
One part of the original constant/linear-output blocker remains: a truly coordinate-independent output still reaches the first torch.autograd.grad(total, x, ...) with total.requires_grad == False, which raises before the later grad.requires_grad zero-Hessian guard can run. I attached this exact issue inline; the new regression only covers a linear output, not a constant one. The old torch.autograd.functional.hessian(..., strict=False) path returns an all-zero Hessian for both cases, so this is still a behavior regression.
Exact-head Test CUDA, Build C++, Build C library, and PyPI/package are green; Test Python, Test C++, and CodeQL are still running.
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The previous commit handled only half of this. It guarded on `grad.requires_grad`, which catches an output that is linear in the coordinates -- the first derivative exists but is constant. An output that does not depend on the coordinates at all never gets that far: `total.requires_grad` is False, and autograd refuses to differentiate an output carrying no graph, so it raised at the *first* `autograd.grad`, before the guard could run. `torch.autograd.functional.hessian` returns an all-zero Hessian for both shapes under its default `strict=False`, so both have to be materialised here. The check now sits before the first derivative. The regression is parametrised over both shapes rather than only the linear one, which is what let the constant case through: the guard was never exercised with the input it was supposed to catch. Removing this guard alone fails the `constant` case and leaves `linear` green.
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Re-reviewed the new head. The remaining constant-output Hessian regression from the previous review is now fixed correctly: _hessian_graph_batched_hvp() checks total.requires_grad before the first autograd.grad and materializes the zero Hessian block, while the existing grad.requires_grad guard continues to cover the linear-output case. The regression test now exercises both truly constant and linear coordinate dependence. I also rechecked the complete 4-file diff, existing review threads, and the new two-file delta; I do not see another high-confidence correctness, numerical, API, memory-management, or test-coverage blocker.
All exact-head workflows are green: Test Python, Test C++, Test CUDA, Build C++, Build C library, CodeQL, and package/PyPI.
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The mathematics here is sound and the write-up is unusually careful, so let me start with what I checked rather than what I want changed.
I reproduced the equivalence claim independently on the head commit. Beyond the shapes the new test file covers, I ran three cases it does not: three frames in one call, two frames with different numbers of real atoms (some atype < 0), and create_graph=True. In float64 the batched and unbatched Hessians agree to 1e-17 – 1e-19 against a scale of 1e-3 – 6e-2 in every one of them, and with a non-degenerate probe scalar the third derivative agrees to 5e-20. Symmetry holds, and the cross-check against the dense route — which shares no code with the graph wrapper — is real independent evidence rather than self-consistency. No tolerance was loosened and no existing test was weakened. The benchmark section states hardware, dtype, TF32, eval mode, warm-up, repeats and timing boundaries, and includes the unfavourable end of the range rather than only the favourable one. I have no correctness objection to the batching itself.
Three things I would like addressed before merge, all about the out-of-memory fallback rather than the numerics:
1. The out-of-memory fallback will not fire for wrapped OOMs. _hessian_graph_row_block catches torch.OutOfMemoryError directly. This repo already has is_oom_error (deepmd/pt/utils/auto_batch_size.py:165) precisely because OOM sometimes arrives as a RuntimeError carrying the real cause in __cause__/__context__ — its own comment names AOTInductor. On those the advertised fallback does not run and the job dies, which matters more here than usual because the new default raises peak memory several-fold.
2. The halved batch is never written back, so the ladder restarts for every component. With three frames and a helper that refuses batches above 2, the attempted sequence is [8, 4, 2, 8, 4, 2, 8, 4, 2], with six warnings. Each failed attempt is a full forward plus a first-order backward. In the regime the fallback exists for, this spends the speedup the PR is about. Keeping the surviving batch in hvp_batch fixes it and also stops the log spam.
3. The batch is priced on the first frame and used for all of them. The comment justifies reuse by "the neighbour count ... is the same for every component of one call", which is true across ci but not across ii: each frame has its own n_real from the atype >= 0 mask and its own neighbour count. A batch priced on a sparse frame is then applied to a dense one, and only the ladder in point 3 recovers it.
Smaller points, take or leave:
-
doc/env.mdsays the result does not depend on the batch. Mathematically true, and the float32 differences the description reports (1e-6 relative RMS) are ordinary rounding from a longer summation chain, not a concern. But since the CUDA default now sizes the batch from free memory, a float32 Hessian is no longer bit-reproducible run-to-run on the same machine; a sentence saying "float64 exact, float32 at rounding level, automatic sizing not bit-reproducible" would make the doc precise. -
_hvp_replica_costcallstorch.cuda.reset_peak_memory_statsunconditionally, and on CUDA the probe is the default path, so every Hessian call silently clears a process-wide counter thatdeepmd/pt/utils/auto_batch_size.pyreads against a baseline. -
The 0.5 free-memory fraction is not in
doc/env.md(only the cap of 8 is), and the adjacentDP_INFER_BATCH_SIZEentry documents 0.9. -
_hessian_graph_batched_hvpre-implements_WrapperForwardEnergyGraph.__call__'s forward, so a change toforward_common_atomic_graphor to the per-cireduction has to land in two places. Incidentally,hvp_kwargsand the wrapper's constructor keywords are the same thirteen names with the same values, sowrapper = _WrapperForwardEnergyGraph(**hvp_kwargs)would remove the duplicated argument list outright. -
Every test uses a single frame with no virtual atoms. The frame axis is the axis being replicated and
n_real != nlocis a real branch. I verified both are correct, so this is coverage rather than a defect, but it is worth pinning. -
test_create_graph_keeps_the_path_to_the_coordinatesnever compares a value, and its probe scalarhessian.sum()is identically zero for a translation-invariant energy — I measured the resulting gradient as exactly zero at every batch size, sotorch.isfinite(back).all()carries no signal.(hessian**2).sum()makes it non-degenerate. -
The four new
parametrizelines lack the trailing comments this repo asks for. -
DP_HESSIAN_HVP_BATCH_CAPandDP_HESSIAN_HVP_MEMORY_FRACTIONare hard-coded constants with environment-variable-style names. -
int(os.environ.get("DP_HESSIAN_HVP_BATCH"))is unguarded, so a malformed value raises at import of the whole backend. Existing code does the same elsewhere, so this is only a suggestion. -
The docstring's "Exactly equivalent" is followed immediately by the non-zero differences it measures.
One process note, not an objection to the change: the default path introduced here — automatic sizing, the memory probe, the free-memory budget and the OOM ladder — is CUDA-only, and it is guarded by exactly the tests that skip without CUDA. The CUDA jobs are label-gated and skipped on this PR, so the new default behaviour has not been executed in CI. Everything that did run, passed.
The batched-Hessian ladder and the pricing probe caught only torch.OutOfMemoryError, but the allocator failure does not always arrive with that type: AOTInductor rewraps it in a plain RuntimeError, keeping the original text in the message, only in the __cause__ chain, or stripping both behind its run_func_ signature. A catch keyed on the exception type lets every one of those forms end the run, which the fallback exists to prevent. Both sites now delegate to the repository's is_oom_error (deepmd/pt/utils/auto_batch_size.py), which walks the exception chain and knows the wrapper signatures; it also releases the allocator cache itself on a positive match. The probe fallback and the ladder behave exactly as before for the unwrapped form. The tests feed the ladder all three wrapped forms and assert it still halves 8, 4, 2 and returns the unbatched answer, and that an unrelated RuntimeError propagates instead of being retried smaller; the probe fallback test is parametrised over the plain and wrapped forms.
The halved batch stayed local to _hessian_graph_row_block and was never written back to hvp_batch, so every frame and every output component restarted the ladder from the top: three frames with only batches up to 2 fitting attempted [8, 4, 2, 8, 4, 2, 8, 4, 2] and printed six warnings. Each failed attempt pays a full forward plus a first-order backward, so in exactly the regime the fallback exists for it spent the speedup batching was bought for. The helper now returns the batch that fit alongside the Hessian, and the caller keeps it in hvp_batch, so later calls start where the last one survived. The two-frame test asserts the attempts are [8, 4, 2, 2] and that both frames still return the unbatched answer.
The automatic batch was priced once, on the first frame with real atoms, and reused for every later frame, but each frame has its own neighbour count and its own count of real atoms: a batch priced on a sparse frame is then spent on a dense one, which only the OOM ladder recovers, and a batch priced on a dense frame idles on sparse ones, which nothing recovers. The Hessians accumulated for earlier frames also shrink the free memory a later frame has, which a price taken up front cannot know. Pricing costs a single Hessian-vector product (one row out of 3 * nloc), so run it once per frame; within a frame every output component still shares one price. The CUDA test asserts a two-frame call prices twice and still returns the unbatched answer.
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Re-reviewed at 923bed52. The three inline points of my 09-22 review are addressed at head: both OOM catch sites delegate to is_oom_error, _hessian_graph_row_block returns the batch that fit and the caller keeps it, and the pricing probe now runs inside the frame loop. I restored make_model.py from each fix commit's parent and ran the head test file: the wrapped-OOM tests (three variants) and the surviving-batch test fail pre-fix and pass at head, on CPU. The per-frame pricing test cannot run anywhere as shipped; details inline.
I also re-ran the equivalence check at head in float64 on CPU: three frames in one call, two frames with different numbers of real atoms (one atype < 0), and three frames with a different batch forced per frame all agree with the DP_HESSIAN_HVP_BATCH=1 reference to 1e-19 against a scale of 1e-3, with the virtual-atom rows exactly zero. The exactness claim holds.
Blocking: the one regression test for the newest fix is skipped in every job (inline, test file line 231). One design note on the interaction between the last two fixes (inline, make_model.py line 678).
Suggestions, none of the earlier ones were taken up, so I repeat only those I still think are worth doing:
make_model.py:412says "Exactly equivalent" and "no approximation is made", then reports a 3e-6 float32 relative RMS difference a few sentences later. "Exact in float64; float32 differs at rounding level" is what the measurements support.deepmd-kit/deepmd/pt_expt/model/make_model.py
Line 412 in 923bed5
test_create_graph_keeps_the_path_to_the_coordinatesprobes withhessian.sum(), which is identically zero for a translation-invariant energy (measured 5e-20, gradient exactly 0.0), soisfinitecarries no signal.(hessian**2).sum()is non-degenerate.- The six
parametrizelines have no trailing comment, which the pt_expt test guidance asks for. - Both
exceptblocks build a freshAutoBatchSize(silent=True)only to callis_oom_error, whose body never touchesself. The constructor parsesDP_INFER_BATCH_SIZE, so a malformed value there raises from inside the handler and masks the real error. A module-level helper, orAutoBatchSize.is_oom_error(None, e)-style staticmethod use, avoids it.deepmd-kit/deepmd/pt_expt/model/make_model.py
Line 590 in 923bed5
is_oom_errortreats any AOTInductor runtime failure as OOM. Upstream that is justified by a ladder that shrinks to 1 and then raises; here a real AOTI bug becomes a "did not fit" warning plus a slow silent rerun on the unbatched path.doc/env.md:93-97says out-of-memory errors still reduce the batch, butis_oom_errormatches only CUDA markers, so an explicit batch above 1 that does not fit on CPU ends the run.Lines 93 to 97 in 923bed5
int(os.environ.get("DP_HESSIAN_HVP_BATCH"))atenv.py:57-60is unguarded; an empty or non-numeric value fails the import of the whole backend, and 0 or negatives are accepted.
CI: 58 checks, 4 skipping (both CUDA jobs and two release jobs), everything else passes. 12 of the 35 new test cases are CUDA-gated, so the default automatic-sizing path has still not executed in CI.
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The implementation fixes the previously reported OOM/batch-policy issues, but the regression coverage is still not effective for the per-frame repricing behavior. test_the_batch_is_repriced_for_each_frame is skipped when CUDA is unavailable even though it only verifies that _auto_hvp_batch is recomputed per frame and can safely run on CPU. On this exact head, the CUDA Python/C++ jobs are also skipped, so the fix currently has no effective CI regression coverage. Please make that test runnable in the normal CPU suite (or otherwise ensure the behavior is exercised by a required CI job) before merging.
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test_the_batch_is_repriced_for_each_frame only counts calls to
_auto_hvp_batch, which _cal_hessian_ext_graph makes once per frame on
every device; on a device without CUDA it returns 1 without touching
the allocator. Gated on torch.cuda.is_available(), the regression test
for per-frame pricing could run only in the CUDA jobs, which skip on
pull requests unless labelled.
On CPU it fails with make_model.py from before per-frame pricing
("priced 1 times for 2 frames") and passes with it.
test_an_out_of_memory_probe_falls_back_instead_of_escaping replaces _auto_hvp_batch with a stub that raises, so it exercises only the handler in _cal_hessian_ext_graph, which is the same on every device; the CUDA gate only kept it out of unlabelled pull-request runs. On CPU it fails when the handler re-raises and passes with it.
In automatic mode every frame is priced afresh, and the fresh price overwrote the batch the previous frame's out-of-memory ladder had settled on. A price is an estimate of what the device holds; an out-of-memory error is a measurement of it. On a call whose real ceiling sits below the estimate, each frame walked the ladder down again, paying a failed forward and first-order backward per step and printing the warnings again. Once a batch has been refused, later frames with the same number of real atoms are now priced no higher than the batch that survived. The cap only lowers a price, it is set only when a batch was actually refused, and every frame is still priced, so a sparser frame keeps its own lower price. It is keyed by the real-atom count, the only size known before the graph is built, so a frame of another size is priced on its own instead of idling at a batch learned on a different one -- the mismatch per-frame pricing was introduced to avoid. A probe that itself runs out of memory counts as a refusal down to one row, and once one row is all that fits, later frames of that size skip the probe: it can no longer change the batch, and it is the allocation that failed. Explicit values keep their existing behaviour. The env.py comment still said the batch was chosen per call; since 923bed5 it is chosen per frame. The new tests drive automatic mode with stub prices on any device: [8, 8] with batches up to 2 fitting attempts [8, 4, 2, 2] rather than [8, 4, 2, 8, 4, 2]; a lower later price still wins over the cap; a call that never ran out of memory caps nothing; a second frame with one atom fewer keeps its own price ([8, 4, 2, 8]); and after a refused probe or a ladder that bottomed out, the remaining frames of a three-frame call are not priced again.
The out-of-memory ladder halved the batch by rounding down, so an odd batch skipped the one below it: 3 went straight to 1, the one-row-at-a-time path, and a batch of 2 that would have fit was never tried. The automatic price lands on odd values, so this is the common case: on DPA-4 a price of 7 under a capped device went 7, 3, 1 and took about twice as long as a batch of 2 would have. Round up instead, so 7 goes to 4 and then 2, and 1 is reached only from 2. Even batches halve exactly as before. The test starts the ladder from 7, 3 and 5 and asserts [7, 4, 2], [3, 2] and [5, 3]; rounding down fails all three.
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Reviewed only the four new commits since 923bed5, plus their Hessian-policy integration and CI evidence. The prior coverage blocker is fixed: per-frame pricing and stubbed probe-OOM tests no longer require CUDA. The new OOM ceiling is local to one call and keyed by real-atom count; it caps only sizes that encountered a refusal, permits lower fresh prices, preserves independent pricing for other sizes, and skips futile probes after reaching one row. The ceil-halving ladder now tries 2 before falling back to 1. Added cases cover these branches against the unbatched Hessian. No new actionable defect found in this delta.
Newly available CUDA evidence still needs attention: test_auto_batch_rises_with_free_memory fails at line 775 because chosen[0] is 4 instead of 1 (https://github.com/deepmodeling/deepmd-kit/actions/runs/37326036822/job/111816901041). This test is unchanged from the previously reviewed commit; this is a new CI observation, not a claim that the delta introduced it. It mocks mem_get_info but leaves memory_reserved - memory_allocated real, while _auto_hvp_batch includes that reusable cache in its budget. The asserted endpoint therefore depends on allocator state left by earlier tests. Please control the reusable-memory term, and preferably the measured probe cost, for a deterministic policy assertion. See source/tests/pt_expt/model/test_hessian_hvp_batch.py:763–776 and deepmd/pt_expt/model/make_model.py:544–550.
CPU Test Python, builds, CodeQL and pre-commit succeed. The latest CUDA workflow failed; its separate C++ failure shows Warp CUDA Toolkit 13.4 versus driver 12.2 and an empty CUDA-device list. CPU Test C++ has 15 LAMMPS JSON-decoding setup errors; Read the Docs failed. No CPU/GPU tests were run locally and not every CI failure's cause was established. This head is not all-checks-green.
TestHvpBatchPolicy simulates free memory by patching mem_get_info, but _auto_hvp_batch also counts what the caching allocator holds and is not using (memory_reserved - memory_allocated). Late in a long session that cache is real: in the CUDA job on a V100, test_auto_batch_rises_with_free_memory chose 4 at a simulated 8 MiB free, because the stale cache rather than the simulated free memory set the budget. Patching memory_reserved to match memory_allocated pins the cache at zero, so the tests measure the arithmetic they claim to. Reproduced locally by leaving 254 MiB of unreleasable cache before the class runs: the old tests fail, these pass. Pinning the cache at zero would leave that term untested, so test_cached_memory_counts_as_free covers it: with no free memory and 1 GiB cached, a 32 MiB product is still batched to the cap. It fails if the budget ignores the cache.
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Reviewed only the single test commit after 38b1b28, with the existing allocator-budget and probe contract as integration context. No new actionable defect found in this +41/−8 delta.
The change addresses the allocator-state dependence reported in review #5423996840: _free() makes memory_reserved(device) track memory_allocated(device), so the reusable-cache term is zero for the bound/monotonicity assertions even when earlier tests have left a large real cache. The separate test_cached_memory_counts_as_free restores coverage of that term by supplying zero driver-free bytes and 1 GiB reusable cache; with the 32 MiB probe and 0.5 budget fraction, the expected batch reaches the cap of 8. Omitting reusable cache from the production budget would instead choose 1 and fail this new assertion. The production allocator policy is unchanged.
Validation: static inspection of the exact commit, its one-commit ancestry, prior review/discussion, and the relevant _hvp_replica_cost/_auto_hvp_batch code. No local CPU or GPU tests were run; the changed policy tests still use a real CUDA allocation/peak-memory probe and remain CUDA-gated. This review therefore closes the source-review gap, without claiming a fresh GPU test pass.
CI snapshot (2026-10-07 10:03 UTC): the newer exact-head CUDA run is still preparing its test jobs (https://github.com/deepmodeling/deepmd-kit/actions/runs/37600503858); the earlier successful CUDA workflow skipped both actual CUDA test jobs. Test Python and Test C++ are still in progress, and Read the Docs is failing. This is not an all-checks-green assessment.
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Re-reviewed at 38b1b28e. Both inline points of my 09-26 review are fixed: the two CUDA gates are gone (228c8c4, 55f8a72) and the per-frame pricing test now runs on CPU and still fails with make_model.py from 923bed525^ (priced 1 times for 2 frames); and auto mode now carries a per-call ceiling keyed by real-atom count (efa3dc1, make_model.py:659-721), with two committed auto-mode tests whose cases fail on the parent commit and pass at head. The new rounding fix (38b1b28) also has tests that fail on its parent ([7, 3], [3], [5, 2] sequences); the halving loop strictly decreases and terminates. Head on CPU: 35 passed, 9 skipped (all CUDA gates).
Blocking, inline: the PR's own new test test_auto_batch_rises_with_free_memory fails on this head's CUDA job because the mock covers only half of the memory budget (test file). Two further inline notes: the parametrize trailing comments, and the exactness wording in doc/env.md.
Suggestions, no obligation to act:
- Some test docstrings claim more than the test checks:
test_probe_prices_one_product_not_the_whole_hessianruns in explicit mode so the probe never executes, and the repriced test on CPU compares the unbatched path with itself (only the call count carries signal).deepmd-kit/source/tests/pt_expt/model/test_hessian_hvp_batch.py
Lines 353 to 372 in 38b1b28
- The CUDA branch of
_auto_hvp_batchis covered only by the nine CUDA-gated cases; withmem_get_info,memory_reserved,memory_allocatedand the probe cost mocked, those could run on CPU.deepmd-kit/deepmd/pt_expt/model/make_model.py
Lines 544 to 550 in 38b1b28
- Earlier notes still open:
hessian.sum()as the create_graph probe scalar,AutoBatchSize(silent=True)built inside theexcept, and the unguardedint()ofDP_HESSIAN_HVP_BATCH.
CI: 59 checks, 51 pass, 6 fail, 2 skipping. The Test Python on CUDA failure includes this PR's own test above; the C++ CUDA (toolkit/driver mismatch), LAMMPS charge_spin and readthedocs failures look unrelated to this PR. No unresolved threads from others.
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Re-reviewed at c76ba8c9. The blocking point from my last review is fixed. The policy tests now mock driver-free memory, reserved and allocated memory and the replica cost, so they no longer read the device. I emulated a CUDA allocator on CPU with 248 MiB of unused cache. Under it, the 38b1b28 version of test_auto_batch_rises_with_free_memory fails with assert 4 == 1, the value the CUDA job reported. The head version passes with 0, 248 and 1024 MiB of cache.
The new tests still fail on a broken policy. Each of these mutants is caught:
- ignoring the cache (
assert 1 == 8) - always returning the cap (
assert 8 == 1) - always returning 1
- dropping the cap clamp
The parametrize comments are in, and doc/env.md now states that agreement holds to rounding. On CPU the head gives 44 passed, 1 skipped (the CUDA-gated probe test).
Non-blocking notes inline:
- two gaps in what the mocked policy tests can detect
- two test docstrings that describe a path the test does not run
CI: 67 checks, 62 pass, 1 fail (readthedocs, unrelated) and 4 skipping. The skipped ones include Test Python on CUDA and Test C++ on CUDA, which are label-gated, so no CUDA job has run on this head.
| monkeypatch.setattr( | ||
| torch.cuda, | ||
| "memory_reserved", | ||
| lambda *a, **k: torch.cuda.memory_allocated(*a, **k) + cached, | ||
| ) | ||
| batch = mm._auto_hvp_batch(env.DEVICE, self._probe(32 * self.MIB)) | ||
| assert batch == mm.DP_HESSIAN_HVP_BATCH_CAP |
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Suggestion: this test cannot tell reserved - allocated from reserved. _free mocks memory_allocated to 0, so the reservation here equals the cache. Replacing make_model.py:548 with reusable = torch.cuda.memory_reserved(device), which counts memory in use as free, still passes the whole file (44 passed, 1 skipped on CPU). A nonzero allocation separates the two: with memory_allocated at 512 MiB, memory_reserved at 512 + 256 MiB and no free memory, the correct budget gives a batch of 4, while the mutant gives 8 (the cap).
| monkeypatch.setattr( | ||
| mm, | ||
| "_hvp_replica_cost", | ||
| lambda *a, **k: 32 * self.MIB, | ||
| ) |
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Suggestion: with _hvp_replica_cost replaced by a constant, no test checks the measured cost any more. The only test that runs the real function is CUDA-gated and asserts max_rows, not the price. With _hvp_replica_cost mutated to return 1, the head tests pass. The 38b1b28 version of test_auto_batch_rises_with_free_memory caught that mutant (assert 8 == 1), because it priced a real 32 MiB probe. Peak minus base can be checked on CPU by mocking synchronize, reset_peak_memory_stats, memory_allocated and max_memory_allocated, for example base 100 MiB and peak 132 MiB give 32 MiB, and by asserting that the probe ran once. _probe (line 744) is now never called, so "costs a known amount" no longer describes anything the test measures.
| def test_the_probe_does_not_build_a_full_identity(self, monkeypatch) -> None: | ||
| """Pricing one product must not allocate the ``ndof x ndof`` identity. | ||
|
|
||
| The identity is the allocation batching exists to avoid; building it to | ||
| decide the batch can itself be what runs the device out of memory, and | ||
| it inflates the very cost the probe is measuring. | ||
| """ | ||
| seen = [] | ||
| real_eye = torch.eye | ||
|
|
||
| def record_eye(n, *args, **kwargs): | ||
| seen.append(n) | ||
| return real_eye(n, *args, **kwargs) | ||
|
|
||
| monkeypatch.setattr(torch, "eye", record_eye) | ||
| monkeypatch.setattr(mm, "DP_HESSIAN_HVP_BATCH", 4) |
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Suggestion: DP_HESSIAN_HVP_BATCH is set to 4 here, so auto_batch is False and the pricing probe never runs (make_model.py:657-658). The docstring describes the probe ("Pricing one product must not allocate the identity ... building it to decide the batch"). What the test checks is that the explicit batched path builds no ndof x ndof identity. Either align the docstring with that, or run in automatic mode with _auto_hvp_batch stubbed to call the probe, so the probe path is the one under test.
| ``test_dpa2_graph_lower`` already reaches the batched helper, but only because | ||
| the batch it happens to get exceeds 1: a batch of 1 would turn that coverage | ||
| into coverage of the unbatched path alone, silently. Here the batch is the | ||
| object under test, and a counter asserts which branch ran so the coverage | ||
| cannot drift away again. |
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Suggestion: on CPU, with DP_HESSIAN_HVP_BATCH unset, _auto_hvp_batch returns 1 (make_model.py:539-543), and test_dpa2_graph_lower sets neither the variable nor a mock. On the CPU jobs that test therefore takes the unbatched path. The sentence holds only on CUDA, and should say so.
_cal_hessian_ext_graphbuilt the Hessian throughtorch.autograd.functional.hessian, which withvectorize=Falseevaluates one Hessian row per second-order backward pass:3 * nlocsequentialpasses, each far too small to keep the GPU busy.
This replicates the structure along the frame axis the carry-all graph already has, so one forward and
one first-order backward build a graph that every chunk of seed vectors then reuses, and each
second-order backward returns a whole batch of rows. Frames are independent, so the replicated system's
energy is a sum of independent terms and its Hessian is block diagonal — the result is exact, not an
approximation. No
vmapis involved, so custom autograd Functions that lack a batching rule keepworking.
Only the graph route changes. The dense route (
_cal_hessian_ext) is untouched, andDP_HESSIAN_HVP_BATCH=1restores the previous behaviour exactly.Exactness
In float64 the two routes agree to 1e-14 relative or better — at machine precision on the small
example model, and within about two orders of magnitude of it on the real checkpoint, whose own
unbatched answer is not exactly symmetric either:
examples/water/dpa4, 16 / 32 atomsmax|H_B − H_1|, B=24‖H_8 − H_1‖_RMS / ‖H_1‖_RMS‖H − Hᵀ‖_RMS / ‖H‖_RMSIn float32 the two differ by 1.0e-6 – 3.6e-6 relative RMS, against the unbatched path's own asymmetry of
3.2e-7 – 9.5e-7. That is the longer summation chain, not a different computation — the float64 agreement
above is what settles equivalence.
Speedup
Measured on one H20,
model.eval(), float32, TF32 off, DPA-4.0.1-Pro-MPtrj, rcut 6.0 Å. All batchsizes timed inside one process (load once, switch batch size, warm up then median of 3), so the
ratios carry no process-to-process term.
The speedup tracks edge count, not atom count. A 216-atom dilute system with 1,080 edges still gets
3.40×; a 108-atom solid with 5,832 edges gets 1.24×. Batching recovers kernel-launch overhead, and that
overhead stops mattering once a single Hessian-vector product already saturates the GPU. As a rule of
thumb on this hardware, batching pays below ~2,000 edges and buys little above ~4,000.
Memory
Peak memory is linear in the edge count, in the atom count, and in the batch size. Over 18 points
spanning 54 – 19,008 edges and 8 – 512 atoms, one expression fits every measurement to 0.2%:
("edges" counts directed neighbour pairs including periodic images.) Fitting each batch size separately
gives per-edge coefficients 4.497 / 7.765 / 14.302 / 27.370 / 53.406 for B = 1 / 2 / 4 / 8 / 16 —
increments of 3.268, 3.268, 3.268, 3.260, with no drift. The fit over the smaller systems predicted
65,776 MiB for 256-atom fcc Al before that point was run; it measured 65,733.
So the batch size divides the system size that fits. On a 96 GiB card:
Measured boundary: 256-atom fcc Al fits at B=1 (65.7 GiB); 500 atoms runs out of memory.
For reference, the first-order (energy/force/virial) pass obeys
peak(MiB) = 508 + 1.293 * edges + 2.93 * natoms(11 points, 0.1%), so the Hessian's peak converges to3.4× the first-order peak — that ratio bounds what any block-wise or rematerialising scheme could
recover.
Choosing
DP_HESSIAN_HVP_BATCHLeft unset, the batch is chosen per frame, mirroring what
DP_INFER_BATCH_SIZEalready does forinference batches: one Hessian-vector product per frame measures what a replica costs there —
neighbour counts differ between frames, so one measurement does not price them all — and the batch
becomes what the free memory affords, capped at 8. That needs no per-model constants, which a fitted
memory model would, and it costs one row out of
3 * nloc. If a batch, or the measurement itself, thenruns out of memory, the batch that survived caps every later frame with the same number of real atoms in
that call.
The measurement covers a whole product, while each batch step past the first adds only its marginal
share, so the estimate reads high and the batch comes out conservative. That is the direction to err: a
batch that turns out too large is recovered by halving and retrying, and nothing recovers the time lost
to one that was too small.
Setting the variable disables the automatic choice and uses the value given, including above the cap.
The out-of-memory fallback still applies to it — halving the batch (rounding up, so 2 is tried before
1), warning which one was used, and keeping the surviving batch for the rest of the call — because halving changes how the Hessian is
computed, not what it is, and the alternative is ending a run that could have finished. The fallback
recognises wrapped out-of-memory errors via the repository's
is_oom_error, since the allocatorfailure does not always arrive as
torch.OutOfMemoryError(AOTInductor rewraps it in a plainRuntimeError).DP_INFER_BATCH_SIZEbehaves the same way: an explicit value disablesgrowth, while out-of-memory errors can still reduce the batch.
On a device without CUDA there is no allocator to size against and no recoverable out-of-memory error
to catch, so the automatic choice is 1; an explicit value is still honoured.
Tests
source/tests/pt_expt/model/test_hessian_hvp_batch.pymakes the batch size the object under test: afloat64 DPA-1 model meeting the graph-route gate, checked at batch sizes 2, 3, 4, 8 and 16 against the
batch-size-1 result.
3 * nlocis 15, so 2, 4, 8 and 16 leave a partial final chunk and cover thezero-padding branch while 3 divides evenly, and 16 exceeds
3 * nlocand is clamped. A counter over thethree Hessian implementations asserts that batch sizes 0 and 1 take the unbatched path, that the larger
sizes take the batched helper, and that the dense route neither sees the setting nor changes with it.
The dense Hessian doubles as an independent cross-check, sharing no code with the graph wrapper.
The automatic choice is covered too: that it stays within
[1, cap]whatever the free memory, that itnever shrinks as memory grows, that it stays at 1 without CUDA without running the probe, and that the
probe prices one Hessian-vector product rather than the whole Hessian. The fallback is covered by making
the helper refuse batches above 2 and asserting the retry walks 8, 4, 2 and still returns the unbatched
answer, and by making every batch fail and asserting it lands on the original path. Wrapped
out-of-memory errors take the fallback too, in all three forms
is_oom_errorknows (message marker,cause chain, AOTInductor signature), while an unrelated
RuntimeErrorstill propagates; the survivingbatch is kept for later frames (
[8, 4, 2, 2], not[8, 4, 2, 8, 4, 2]); and the automatic choice isasserted to price once per frame, and a refused batch to cap later frames of the same size only. Odd
batches halve upwards (
7, 4, 2, not7, 3, 1). These tests stub the probe and run without CUDA.test_dpa2_graph_lower.pyalready reached the batched helper, but only because the batch it happens toget exceeds 1 -- that coverage would have vanished silently had the batch become 1, which is exactly
what these tests now prevent.
Scope and compatibility
autograd.functional.hessiancannot),which the surrounding code already notes; nothing here changes what is exportable.
DP_HESSIAN_HVP_BATCH=1(or 0) takes the previous one-row-at-a-time path unchanged.3 * nloc, and a final partial chunk is zero-padded so the retained graphkeeps its shape; the padded rows are discarded.
Usage note
A model whose descriptor carries
use_amp=Truegates its bfloat16 autocast onself.training, and amodule returned by
deserialize()starts in training mode. Calling such a model for inferencewithout
.eval()therefore runs the descriptor under bfloat16 silently — no warning, andnext(model.parameters()).dtypestill reportstorch.float32. The symptom is ~1e-3 relative noisebetween repeated identical calls and much higher peak memory. Every number above was taken with
.eval()asserted. This is pre-existing behaviour, not introduced here, but it is easy to hit whenbenchmarking a Hessian.
How the numbers were taken
One process per measurement point,
torch.cuda.max_memory_allocated()reset per point, warm-up beforetiming, TF32 disabled,
model.eval()asserted at entry. Peak memory is reproducible to the byte acrossprocesses (the same 32-atom structure measured 8,900 MiB at B=1 in two independent runs); wall-clock is
not, which is why every speedup above is an in-process ratio.
Summary by CodeRabbit
New Features
Documentation