GitHub - bzhanglab/nf-docker: docker files for pipeline steps · GitHub

Name		Name	Last commit message	Last commit date
annovar		annovar
arriba		arriba
binding_prediction		binding_prediction
bwa		bwa
ciri		ciri
ciriquant		ciriquant
copywriter		copywriter
fdr_calc		fdr_calc
fragpipe		fragpipe
funmap		funmap
gdc-client		gdc-client
gistic2		gistic2
harmonizer		harmonizer
ice		ice
immunedeconv_and_ssgsea		immunedeconv_and_ssgsea
inputconvertor		inputconvertor
irfinder		irfinder
maftools		maftools
ms2rescore		ms2rescore
msisensor		msisensor
mutation-reannotation		mutation-reannotation
mutation-signatures		mutation-signatures
neodb		neodb
neoflow		neoflow
netsam		netsam
optitype		optitype
pdc_client		pdc_client
pdeep3		pdeep3
pepquerymhc		pepquerymhc
percolator		percolator
pga		pga
phosphors-wine		phosphors-wine
picard		picard
prepare_fragpipe		prepare_fragpipe
prosit_deeplc		prosit_deeplc
pxg		pxg
py4cytoscape		py4cytoscape
pypgatk		pypgatk
python		python
r-tidyverse		r-tidyverse
rna-seq-combine-summary		rna-seq-combine-summary
rna-seq-misc-ydou		rna-seq-misc-ydou
rsem		rsem
samtools		samtools
sigprofiler		sigprofiler
sra-tools		sra-tools
ubuntu		ubuntu
variant_annotation		variant_annotation
webgestaltr		webgestaltr
.gitignore		.gitignore
README.md		README.md

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Dockerfiles for software used in nextflow pipeline

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docker files for pipeline steps

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