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biotite-dev
biotite
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Implement backwards incompatible changes
- #949
#949
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padix-key
merged 21 commits into
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Oct 14, 2026
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Implement backwards incompatible changes
#949
padix-key
merged 21 commits into
biotite-dev:v2
biotite-dev/biotite:v2
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padix-key:v2-finish
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Commits on Oct 14, 2026
Make `EValueEstimator.from_samples()` accept a `Generator`
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Do not introduce line breaks in `FastaFile` by default
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Document `FastqFile.Offset` as the sole alternative to integer offsets
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Remove `verbose` parameter from `fetch()` functions
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Make `fetch()` functions accept and return `Path` objects
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Change default scoring scheme for alignment functions
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Represent secondary structure elements as `IntEnum`
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Represent Compiled Graphics Objects using dedicated `CGO` class
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Add `ColorScheme` dataclass
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Add `GFFRecord` dataclass
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Add `GenBankLocus` dataclass
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Add `GenBankRecord` dataclass
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Refactor `AffineTransformation` into `RigidTransformation`
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Use `label` fields by default in `biotite.structure.io.pdbx`
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Remove deprecated code
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Rename `biotite.application_v2` to `biotite.application`
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fixup! Represent secondary structure elements as `IntEnum`
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fixup! Add `GFFRecord` dataclass
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fixup! Use `label` fields by default in `biotite.structure.io.pdbx`
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fixup! Add `ColorScheme` dataclass
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fixup! Refactor `AffineTransformation` into `RigidTransformation`
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