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[padix-key]

Resolves #947

[codspeed]

Merging this PR will regress 2 benchmarks

⚠️ Different runtime environments detected

Some benchmarks with significant performance changes were compared across different runtime environments,
which may affect the accuracy of the results.

Open the report in CodSpeed to investigate

⚡ 12 improved benchmarks
❌ 2 regressed benchmarks
✅ 95 untouched benchmarks
⏩ 14 skipped benchmarks¹

Warning

Please fix the performance issues or acknowledge them on CodSpeed.

Performance Changes

	Benchmark	BASE	HEAD	Efficiency
❌	benchmark_match_kmer_selection[KmerTable-11*11*1*1***111]	242.1 µs	276.6 µs	-12.47%
❌	benchmark_match[KmerTable-11*11*1*1***111]	334.3 µs	372.1 µs	-10.17%
⚡	benchmark_set_structure[cif-False]	92.9 ms	31.7 ms	×2.9
⚡	benchmark_set_structure[cif-True]	103.5 ms	41.7 ms	×2.5
⚡	benchmark_connect[connect_via_distances]	3.2 ms	1.7 ms	+86.63%
⚡	benchmark_serialize_pdbx[cif]	177.7 ms	121 ms	+46.77%
⚡	benchmark_infer_bond_types	1,203 µs	837.8 µs	+43.6%
⚡	benchmark_clustering[neighbor_joining]	557.7 µs	395.2 µs	+41.12%
⚡	benchmark_set_structure	9.4 ms	7 ms	+35.6%
⚡	benchmark_set_structure_with_bonds	9.6 ms	7.2 ms	+34.54%
⚡	benchmark_match[BucketKmerTable(10000)-None]	400.8 µs	351.9 µs	+13.92%
⚡	benchmark_score_threshold_rule[None]	1.4 s	1.3 s	+11.19%
⚡	benchmark_score_threshold_rule[11*11*1*1***111]	1.4 s	1.3 s	+11.14%
⚡	benchmark_match_kmer_selection[BucketKmerTable(10000)-None]	353.1 µs	320.5 µs	+10.17%

Tip

Investigate this regression by commenting @codspeedbot fix this regression on this PR, or directly use the CodSpeed MCP with your agent.

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_{Comparing padix-key:issue-947 (98e4094) with main (1aaf784)²}

Footnotes

1. 14 benchmarks were skipped, so the baseline results were used instead. If they were deleted from the codebase, click here and archive them to remove them from the performance reports. ↩

2. No successful run was found on v2 (876ce47) during the generation of this report, so main (1aaf784) was used instead as the comparison base. There might be some changes unrelated to this pull request in this report. ↩