panaroo

An updated pipeline for pangenome investigation

Documentation

Documentation for Panaroo can be found here

Name		Name	Last commit message	Last commit date
docs		docs
panaroo		panaroo
scripts		scripts
tests		tests
.gitignore		.gitignore
.travis.yml		.travis.yml
LICENSE		LICENSE
README.md		README.md
panaroo-estimate-fmg.py		panaroo-estimate-fmg.py
panaroo-estimate-img.py		panaroo-estimate-img.py
panaroo-integrate-runner.py		panaroo-integrate-runner.py
panaroo-merge-runner.py		panaroo-merge-runner.py
panaroo-msa-runner.py		panaroo-msa-runner.py
panaroo-qc-runner.py		panaroo-qc-runner.py
panaroo-runner.py		panaroo-runner.py
panaroo-spydrpick-runner.py		panaroo-spydrpick-runner.py
panaroo.png		panaroo.png
panaroo_gene_neighbourhood.py		panaroo_gene_neighbourhood.py
post-plot-runner.py		post-plot-runner.py
prokka-runner.py		prokka-runner.py
setup.py		setup.py