add many more tests and R ports - #1393

Merged

danielnachun merged 30 commits into

mainfrom

Aug 4, 2026

Commits on Jul 30, 2026

add many more tests and R ports
danielnachun
committed
8542b70
add more tests
danielnachun
committed
f53d6a4
test snRNAseq
danielnachun
committed
0ae8460
cover last cells
danielnachun
committed
fdb5a53
restore regtools call
danielnachun
committed
6714a65
fix gitignore issue and add some tools
danielnachun
committed
45499d2
fix pixi calls
danielnachun
committed
7578ec3
try to fix pixi again
danielnachun
committed
26fb48d
fix failures
danielnachun
committed
88acb80
try to speed up methylation pipeline and other fixes
danielnachun
committed
aaee13b
try to fix threadni error again
danielnachun
committed
c825cdf
try to fix threading error again
danielnachun
committed
bdb4092
try to fix threading error again
danielnachun
committed
efa8015
try to fix threading error again
danielnachun
committed
7a0fab2
try to parallelize
danielnachun
committed
fbb066f
fix pixi
danielnachun
committed
0142b36
try further parallelization
danielnachun
committed
c0e493c
fix gregor
danielnachun
committed
8e2fde2
fix gregor
danielnachun
committed
f9535db
fix gregor
danielnachun
committed
4efd6b3
add intact
danielnachun
committed
39e9267
try new preprocesscore fix
danielnachun
committed
13dbc80

Commits on Aug 3, 2026

add platforms
danielnachun
committed
51cf4cf
refactor to work with pixi-setup
danielnachun
committed
c7d24f1
fix apa_calling issue
danielnachun
committed
1847495
doc cleanup
danielnachun
committed
4e0aaf6
fix pipeline
danielnachun
committed
f92acd0
fix pipeline
danielnachun
committed
1003d2a
fix pipeline
danielnachun
committed
bce4e10
fix pipeline
danielnachun
committed
e1715c0