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PathoGenOmics-Lab
BAMpiro
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Merge pull request #2 from PathoGenOmics-Lab/feat/tests-ci
docs
#20:
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Test suite, CI, and a pipeline that runs off our cluster
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Merge pull request #1 from PathoGenOmics-Lab/indel-mask
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docs(tutorials): show installing Nextflow in a conda environment
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#16:
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docs(tutorials): fill gaps — longitudinal analysis, resume/monitor, K…
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docs(tutorials): cross-link the cluster bind note from Your first run
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docs(tutorials): explain Singularity bind mounts for cluster runs
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docs: add a 'Running a non-TB organism' tutorial
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docs: add a step-by-step Tutorials section to the docs site
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report: clickable treatment groups + a search box on the dose panels
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report: info (i) popovers + more interactivity on the dose panels
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report: add a Variant x dose correlation scan (Spearman + BH-FDR)
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report: add a numeric dose metric + a Dose x treatment test
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report: add a samplesheet-metadata cohort filter (treatment, site)
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docs: publish an interactive example QC report on the site
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docs: use MkDocs Material features (diagram, tabs, cards, glossary, c…
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ci(docs): don't deploy to Pages while the repo is private
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docs: migrate the documentation site from mdBook to MkDocs Material
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