Issues

• Import nexml fails

  OpenTreeOfLife/peyotl#183 · Filter by author snacktavish opened on Dec 18, 2023
  2

• Move GitHub API access tokens to a header?

  OpenTreeOfLife/peyotl#177 · Filter by author jimallman opened on May 20, 2020
  1

  

• Replace escaped Unicode chars (\u20ac) in stored JSON?

  enhancementquestion
  OpenTreeOfLife/peyotl#173 · Filter by author jimallman opened on Feb 22, 2017
  2

• TypeAwareDocStore.__init__ should not clone mirrors

  OpenTreeOfLife/peyotl#168 · Filter by author mtholder opened on Oct 13, 2016

• Validation for URL fields...

  OpenTreeOfLife/peyotl#165 · Filter by author jar398 opened on Oct 6, 2016

• Refactor to define document types via configuration?

  enhancement
  OpenTreeOfLife/peyotl#157 · Filter by author jimallman opened on Sep 23, 2016

• Coerce DOI to URL in amendment file

  enhancementlow-priority
  OpenTreeOfLife/peyotl#155 · Filter by author jar398 opened on Aug 22, 2016
  1

• Provide both raw and view URLs for github studies / collections

  enhancement
  OpenTreeOfLife/peyotl#149 · Filter by author kcranston opened on Apr 18, 2016
  2

• Check for lossless roundtrip nexson - export to NeXML - import NeXML - nexson

  OpenTreeOfLife/peyotl#145 · Filter by author jar398 opened on Mar 7, 2016

• NexsonProxy provides no way to get study-level properties

  enhancementlow-priority
  OpenTreeOfLife/peyotl#137 · Filter by author jar398 opened on Dec 9, 2015
  4

• @otu missing where required in treebase conversion

  OpenTreeOfLife/peyotl#126 · Filter by author jar398 opened on Jul 15, 2015
  

• tip labels with both ott ids and names

  low-priority
  OpenTreeOfLife/peyotl#117 · Filter by author jar398 opened on Mar 13, 2015
  1

• iter_study_objs() will crash if study has been deleted

  buglow-priority
  OpenTreeOfLife/peyotl#115 · Filter by author pmidford opened on Feb 17, 2015

• "Warning: you are leaving 1383 commits behind" while installing phylesystem-api

  OpenTreeOfLife/peyotl#88 · Filter by author jar398 opened on Dec 11, 2014
  6

• should migrate to string interpolation in logger functions

  enhancementlow-priority
  OpenTreeOfLife/peyotl#82 · Filter by author mtholder opened on Dec 8, 2014

• should migrate to Enum class

  enhancementlow-priority
  OpenTreeOfLife/peyotl#62 · Filter by author mtholder opened on Nov 21, 2014
  3

• make sure bug fix in merge didn't do any damage

  OpenTreeOfLife/peyotl#60 · Filter by author mtholder opened on Nov 20, 2014

• git_action write_study appears to be unused.

  enhancement
  OpenTreeOfLife/peyotl#51 · Filter by author mtholder opened on Nov 5, 2014

• git_workflows merge does not associate user name with the merge commit

  enhancement
  OpenTreeOfLife/peyotl#50 · Filter by author mtholder opened on Nov 5, 2014

• git_workflows delete_study takes a commit message, but ignores it

  enhancement
  OpenTreeOfLife/peyotl#49 · Filter by author mtholder opened on Nov 5, 2014
  1

• The PhylesystemProxy and PhylesystemShardProxy create, but do not use locks

  enhancementlow-priority
  OpenTreeOfLife/peyotl#48 · Filter by author mtholder opened on Nov 5, 2014

• phylesystem get_public_url has hard-coded github domain. It should be more flexible

  enhancementlow-priority
  OpenTreeOfLife/peyotl#47 · Filter by author mtholder opened on Nov 5, 2014

• The stub code for generating regex from a library of matches (in peyotl.string.create_library...) is incomplete

  enhancementlow-priority
  OpenTreeOfLife/peyotl#46 · Filter by author mtholder opened on Nov 5, 2014

• trimming off the prefix + : from strings from NeXML is not safe for generic NeXML

  enhancement
  OpenTreeOfLife/peyotl#44 · Filter by author mtholder opened on Nov 5, 2014

• {delete|replace}_annotation_from_annot_list in nexson_validation/_validation_base should pay attention to the "preserve" field

  enhancement
  OpenTreeOfLife/peyotl#43 · Filter by author mtholder opened on Nov 5, 2014