Issues

• Allow user to associate Degust upload token with Laxy profile

  MonashBioinformaticsPlatform/laxy#296 · Filter by author pansapiens opened on Jul 7, 2026

• Nextcloud/Owncloud input data source accepts invalid file types

  enhancement
  Feature

  MonashBioinformaticsPlatform/laxy#293 · Filter by author pansapiens opened on Mar 18, 2026
  

• ENA search in UI expects sample accession SAMN.* to exist

  buggood first issue
  MonashBioinformaticsPlatform/laxy#290 · Filter by author pansapiens opened on Jul 22, 2025

• External FASTA (and GTF/GFF) files with DOS/Windows line endings break nf-core/rnaseq

  MonashBioinformaticsPlatform/laxy#289 · Filter by author pansapiens opened on Feb 14, 2025

• External genomes: submitting a job with only and annotation and no FASTA should be disallowed

  bug
  Bug

  MonashBioinformaticsPlatform/laxy#288 · Filter by author pansapiens opened on Feb 3, 2025
  

• Distracting progress bar and layout popping on /#/job page

  enhancement
  MonashBioinformaticsPlatform/laxy#286 · Filter by author pansapiens opened on Feb 7, 2024
  1

  

• Detect and warn if samples files with I1 / I2 FASTQ files are included

  enhancement
  MonashBioinformaticsPlatform/laxy#283 · Filter by author pansapiens opened on Jan 18, 2024
  1

  

• Allow nf-core/rnaseq UI to handle technical replicates

  enhancement
  MonashBioinformaticsPlatform/laxy#282 · Filter by author pansapiens opened on Dec 5, 2023
  

• Add sanity check for FASTQs with UMI in header

  enhancement
  MonashBioinformaticsPlatform/laxy#281 · Filter by author pansapiens opened on Aug 9, 2023
  

• /admin/laxy_backend/accesstoken query fails

  buggood first issue
  MonashBioinformaticsPlatform/laxy#278 · Filter by author pansapiens opened on May 9, 2023
  

• rsync can fail with zero exit code: impacts bulk_move_job_rsync

  bug
  MonashBioinformaticsPlatform/laxy#263 · Filter by author pansapiens opened on Jan 8, 2023 · Future
  1

  

• nf-core/rnaseq: Genome selection in UI doesn't always match version used by backend

  bug
  MonashBioinformaticsPlatform/laxy#262 · Filter by author pansapiens opened on Dec 15, 2022
  

• Include better descriptions at top of pipelines

  enhancement
  MonashBioinformaticsPlatform/laxy#253 · Filter by author pansapiens opened on Oct 11, 2022
  

• Detect FASTQs with zero reads, ignore these or fail fast

  enhancement
  MonashBioinformaticsPlatform/laxy#252 · Filter by author pansapiens opened on Oct 11, 2022
  

• laxydl: Starting a duplicate download with aria2c backend causes one to fail, hang

  bug
  MonashBioinformaticsPlatform/laxy#251 · Filter by author pansapiens opened on Oct 6, 2022
  

• Make it clearer direct uploads aren't supported

  MonashBioinformaticsPlatform/laxy#244 · Filter by author pansapiens opened on Jun 2, 2022
  

• UMI support in RNAseq pipelines

  enhancement
  MonashBioinformaticsPlatform/laxy#239 · Filter by author pansapiens opened on Apr 8, 2022 · Future
  

• When auth tokens expire, open tab appears as if user is still logged in

  enhancement
  MonashBioinformaticsPlatform/laxy#229 · Filter by author pansapiens opened on Dec 15, 2021
  

• File indexing setting some existing File locations to None/null

  bug
  MonashBioinformaticsPlatform/laxy#226 · Filter by author pansapiens opened on Nov 21, 2021
  

• bulk_move_job_rsync not correctly catching non-zero exit code from rsync

  bug
  MonashBioinformaticsPlatform/laxy#224 · Filter by author pansapiens opened on Nov 16, 2021
  

• nf-core/rnaseq won't accept uncompressed fastqs or any fasta reads

  enhancement
  MonashBioinformaticsPlatform/laxy#223 · Filter by author pansapiens opened on Nov 12, 2021
  

• Better inline help docs about how technical replicates / lane merging is handled

  enhancement
  MonashBioinformaticsPlatform/laxy#217 · Filter by author pansapiens opened on Aug 26, 2021
  

• Info box about the RNAsik pipeline

  enhancement
  MonashBioinformaticsPlatform/laxy#216 · Filter by author pansapiens opened on Aug 26, 2021
  

• Pipeline parameters description is pre-filled with info from previous run

  bugfrontend
  MonashBioinformaticsPlatform/laxy#207 · Filter by author pansapiens opened on May 19, 2021

• Large file manifest.csv uploads time out

  MonashBioinformaticsPlatform/laxy#199 · Filter by author pansapiens opened on Mar 31, 2021