Add options for workflow visualization#126
Merged
Merged
Conversation
Contributor
|
Hi Francesco, nice extension! Do you think it would be worth testing the configs on this one too? I can do it... |
Contributor
Author
@Louis-Frey yes, still worth testing the example config, I think. Thanks! |
Contributor
|
I will now proceed to checking the configs (not the COSMO ones). Balfrin seems slow at the moment though... |
Contributor
|
Ok so I tested the example configs Good to merge from my side! |
Louis-Frey
approved these changes
Apr 20, 2026
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
2 participants
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Add --dag and --rulegraph flags to all workflow subcommands, rendering the Snakemake graph as an SVG via kroki.io, which kindly provides this as a free service. With this, we no longer require graphviz to be installed on the host system.
--dagsaves dag.svg--rulegraphsaves rulegraph.svg--dag
--rulegraph