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KosinskiLab

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  1. AlphaPulldown AlphaPulldown Public

    Python 303 58

  2. pyTME pyTME Public

    Python 26 2

  3. alphafold3x alphafold3x Public

    Forked from jkosinski/alphafold3

    Explicit crosslinks in AlphaFold 3

    Python 23 3

  4. af3x af3x Public

    Forked from jkosinski/alphafold3

    Custom fork of AlphaFold 3 enabling explicit modeling of crosslinks

    Python 13 1

  5. colabseg colabseg Public

    Jupyter-based tool for membrane segmentation manipulation

    Jupyter Notebook 10 3

  6. AlphaPulldownSnakemake AlphaPulldownSnakemake Public

    Python 8 2

Repositories

Showing 10 of 21 repositories
  • AlphaJudge Public

    AlphaJudge is a pipeline that evaluates AlphaFold-predicted protein complexes by combining AI-derived confidence metrics (ipTM, pDockQ, PAE, etc.) with physics-based interface features (contacts, area, energy, electrostatics, etc), producing a unified CSV report for model validation and benchmarking.

    KosinskiLab/AlphaJudge’s past year of commit activity
    Jupyter Notebook 4 GPL-3.0 0 2 1 Updated Feb 23, 2026
  • mosaic Public

    Analyze and model biomembranes from 3D structural data.

    KosinskiLab/mosaic’s past year of commit activity
    Python 5 GPL-2.0 0 2 0 Updated Feb 20, 2026
  • AlphaPulldown Public
    KosinskiLab/AlphaPulldown’s past year of commit activity
    Python 303 GPL-3.0 58 20 1 Updated Feb 18, 2026
  • AlphaPulldownSnakemake Public
    KosinskiLab/AlphaPulldownSnakemake’s past year of commit activity
    Python 8 GPL-3.0 2 2 0 Updated Feb 10, 2026
  • alphapulldown-input-parser Public

    Fold specification parser for AlphaPulldown

    KosinskiLab/alphapulldown-input-parser’s past year of commit activity
    Python 0 MIT 0 1 0 Updated Feb 10, 2026
  • af3x Public Forked from jkosinski/alphafold3

    Custom fork of AlphaFold 3 enabling explicit modeling of crosslinks

    KosinskiLab/af3x’s past year of commit activity
    Python 13 1,130 2 0 Updated Nov 28, 2025
  • aplit Public
    KosinskiLab/aplit’s past year of commit activity
    Python 0 0 1 0 Updated Nov 21, 2025
  • pyTME Public
    KosinskiLab/pyTME’s past year of commit activity
    Python 26 GPL-2.0 2 4 0 Updated Oct 10, 2025
  • alphafold Public Forked from google-deepmind/alphafold

    Open source code for AlphaFold.

    KosinskiLab/alphafold’s past year of commit activity
    Python 0 Apache-2.0 2,594 2 2 Updated Oct 7, 2025
  • AlphaLink2 Public Forked from dingquanyu/AlphaLink2

    AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer

    KosinskiLab/AlphaLink2’s past year of commit activity
    Python 1 CC-BY-4.0 21 0 0 Updated Aug 5, 2025
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