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@DessimozLab

Dessimoz Lab

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  1. read2tree read2tree Public

    a tool for inferring species tree from sequencing reads

    Python 157 19

  2. fold_tree fold_tree Public

    snakemake pipeline for creating trees from sequence sets

    Jupyter Notebook 98 17

  3. FastOMA FastOMA Public

    FastOMA is a scalable software package to infer orthology relationship.

    Python 90 17

  4. OMArk OMArk Public

    Python 89 7

  5. edgehog edgehog Public

    Infering ancestral synteny with hierarchical orthologous groups

    Python 38 3

  6. phylo-io phylo-io Public

    Phylo.IO JS tree viewer

    JavaScript 35 11

Repositories

Showing 10 of 55 repositories
  • fastoma-bench Public

    Automatic benchmarking of Fastoma over time

    DessimozLab/fastoma-bench’s past year of commit activity
    Python 2 0 0 0 Updated Feb 21, 2026
  • foldtree2 Public

    foldtree2

    DessimozLab/foldtree2’s past year of commit activity
    Jupyter Notebook 8 AGPL-3.0 4 6 0 Updated Feb 17, 2026
  • matreex Public
    DessimozLab/matreex’s past year of commit activity
    HTML 16 2 0 0 Updated Feb 16, 2026
  • fold_tree Public

    snakemake pipeline for creating trees from sequence sets

    DessimozLab/fold_tree’s past year of commit activity
    Jupyter Notebook 98 MIT 17 6 0 Updated Feb 13, 2026
  • ampliphy Public

    Improve phylogenetic inference by amplifying multiple sequence alignment with homologous sequences

    DessimozLab/ampliphy’s past year of commit activity
    Nextflow 4 MIT 1 0 0 Updated Feb 13, 2026
  • FastOMA Public

    FastOMA is a scalable software package to infer orthology relationship.

    DessimozLab/FastOMA’s past year of commit activity
    Python 90 MPL-2.0 17 8 4 Updated Feb 11, 2026
  • nf-oma-browser-build Public

    Nextflow pipeline to convert OMA to OMA browser

    DessimozLab/nf-oma-browser-build’s past year of commit activity
    Nextflow 2 MIT 0 0 0 Updated Feb 5, 2026
  • yeast_fusion_segmenter Public

    retrain yolov8 to segment and label yeast cells with interupted fusion phenotypes

    DessimozLab/yeast_fusion_segmenter’s past year of commit activity
    Jupyter Notebook 1 MIT 0 0 0 Updated Jan 27, 2026
  • phylo-io Public

    Phylo.IO JS tree viewer

    DessimozLab/phylo-io’s past year of commit activity
    JavaScript 35 MIT 11 5 1 Updated Jan 21, 2026
  • OMAnnotator Public

    Consensus genome annotation using OMA

    DessimozLab/OMAnnotator’s past year of commit activity
    Python 31 2 4 0 Updated Jan 14, 2026
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