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Centers for Disease Control and Prevention

CDC's collaborative software projects to protect America from health, safety, and security threats, both foreign and in the U.S. No PII or PHI permitted

CDCGov Organization

This is CDC's GitHub organization for collaborating on open source projects. More information on CDC's open collaboration projects is available at openCDC.

Check out our Open Source Practices and please suggest any ideas for improvement by sending a pull request.

Check out a portal of all the projects hosted in the CDCGov domain.

If you would like to create a new project, please fill out an issue on https://github.com/cdcgov/template logging in with your CDC credentials.

If you would like to join the CDCGov organization, or would like to suggest some others to join, please drop an issue into the template repo.

No PII/PHI permitted for hosting in this environment.

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  1. cdcgov.github.io cdcgov.github.io Public

    Portal site for all CDCgov projects, https://cdcgov.github.io

    HTML 25 35

  2. template template Public template

    Template repository with rules, practices, and privacy, license, records notices to help people use the CDCgov GitHub organization.

    41 50

Repositories

Showing 10 of 573 repositories
  • cfa-cloudops Public
    CDCgov/cfa-cloudops's past year of commit activity
    Python 2 Apache-2.0 1 21 4 Updated Sep 23, 2026
  • dibbs-ecr-viewer Public

    DIBBS eCR Viewer

    CDCgov/dibbs-ecr-viewer's past year of commit activity
    HTML 14 CC0-1.0 5 102 2 Updated Sep 23, 2026
  • phylophoenix Public

    🔥🌿🐦🔥PhyloPHoeNIx: Pipeline for relatedness determination using PHoeNIx output.

    CDCgov/phylophoenix's past year of commit activity
    Python 12 Apache-2.0 1 6 1 Updated Sep 23, 2026
  • CDCgov/stimulant_opioid_algorithm_medical_codes_R's past year of commit activity
    HTML 4 Apache-2.0 3 0 0 Updated Sep 23, 2026
  • Opioid_SUD_MHI_MedCodes Public

    Code to flag ICD-10-CM codes related to opioid involvement, substance use disorder, and mental health issues in structured hospital data

    CDCgov/Opioid_SUD_MHI_MedCodes's past year of commit activity
    Python 8 8 0 0 Updated Sep 23, 2026
  • covid-isolation-pub-2025 Public

    Public-facing code for modeling analysis of duration of isolation for COVID-19

    CDCgov/covid-isolation-pub-2025's past year of commit activity
    R 0 Apache-2.0 0 0 6 Updated Sep 22, 2026
  • nhsnlink Public
    CDCgov/nhsnlink's past year of commit activity
    C# 2 Apache-2.0 1 0 0 Updated Sep 22, 2026
  • CDCgov/dibbs-ecr-diff's past year of commit activity
    Python 1 Apache-2.0 0 13 5 Updated Sep 22, 2026
  • cfa-vap-hm Public

    Declarative environment management for the CFA VAP using nix.

    CDCgov/cfa-vap-hm's past year of commit activity
    Nix 3 1 6 2 Updated Sep 22, 2026
  • cfa-stf-data Public
    CDCgov/cfa-stf-data's past year of commit activity
    Python 0 Apache-2.0 0 4 5 Updated Sep 22, 2026