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Sophie edited this page May 16, 2025 · 7 revisions

Requirements

Dependencies

  • Singularity/Apptainer (-profile withsingularity)

    • Tested on Linux Server and HPC environments
    • Set common singularity image directory in nextflow.config

  • Docker (-profile withdocker)

    • Tested on M2 MacBook Air (small dataset, no local structure prediction) and Linux Server
    • Start Docker before launching the pipeline

  • Conda (-profile withconda)

    • Select profile server or set Linux .yml file in nextflow.config
    • Note: Due to issues with conda and t-coffee the .yml file may not be working anymore, better to try a local installation of t-coffee

  • Local execution (-profile standard)

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