From ed3686fce597167355fb209e74cabb32b80d6d31 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Fri, 1 May 2026 10:31:34 +0000 Subject: [PATCH] Bump the rust-minor-patch group with 12 updates Bumps the rust-minor-patch group with 12 updates: | Package | From | To | | --- | --- | --- | | [clap](https://github.com/clap-rs/clap) | `4.6.0` | `4.6.1` | | [rayon](https://github.com/rayon-rs/rayon) | `1.11.0` | `1.12.0` | | [cc](https://github.com/rust-lang/cc-rs) | `1.2.58` | `1.2.61` | | [clap_derive](https://github.com/clap-rs/clap) | `4.6.0` | `4.6.1` | | [indexmap](https://github.com/indexmap-rs/indexmap) | `2.13.0` | `2.14.0` | | [libbz2-rs-sys](https://github.com/trifectatechfoundation/libbzip2-rs) | `0.2.2` | `0.2.3` | | [libc](https://github.com/rust-lang/libc) | `0.2.183` | `0.2.186` | | [libz-ng-sys](https://github.com/rust-lang/libz-sys) | `1.1.25` | `1.1.28` | | [libz-sys](https://github.com/rust-lang/libz-sys) | `1.1.25` | `1.1.28` | | [pkg-config](https://github.com/rust-lang/pkg-config-rs) | `0.3.32` | `0.3.33` | | [portable-atomic-util](https://github.com/taiki-e/portable-atomic-util) | `0.2.6` | `0.2.7` | | [typenum](https://github.com/paholg/typenum) | `1.19.0` | `1.20.0` | Updates `clap` from 4.6.0 to 4.6.1 - [Release notes](https://github.com/clap-rs/clap/releases) - [Changelog](https://github.com/clap-rs/clap/blob/master/CHANGELOG.md) - [Commits](https://github.com/clap-rs/clap/compare/clap_complete-v4.6.0...clap_complete-v4.6.1) Updates `rayon` from 1.11.0 to 1.12.0 - [Changelog](https://github.com/rayon-rs/rayon/blob/main/RELEASES.md) - [Commits](https://github.com/rayon-rs/rayon/compare/rayon-core-v1.11.0...rayon-core-v1.12.0) Updates `cc` from 1.2.58 to 1.2.61 - [Release notes](https://github.com/rust-lang/cc-rs/releases) - [Changelog](https://github.com/rust-lang/cc-rs/blob/main/CHANGELOG.md) - [Commits](https://github.com/rust-lang/cc-rs/compare/cc-v1.2.58...cc-v1.2.61) Updates `clap_derive` from 4.6.0 to 4.6.1 - [Release notes](https://github.com/clap-rs/clap/releases) - [Changelog](https://github.com/clap-rs/clap/blob/master/CHANGELOG.md) - [Commits](https://github.com/clap-rs/clap/compare/v4.6.0...v4.6.1) Updates `indexmap` from 2.13.0 to 2.14.0 - [Changelog](https://github.com/indexmap-rs/indexmap/blob/main/RELEASES.md) - [Commits](https://github.com/indexmap-rs/indexmap/compare/2.13.0...2.14.0) Updates `libbz2-rs-sys` from 0.2.2 to 0.2.3 - [Release notes](https://github.com/trifectatechfoundation/libbzip2-rs/releases) - [Changelog](https://github.com/trifectatechfoundation/libbzip2-rs/blob/main/NEWS.md) - [Commits](https://github.com/trifectatechfoundation/libbzip2-rs/commits) Updates `libc` from 0.2.183 to 0.2.186 - [Release notes](https://github.com/rust-lang/libc/releases) - [Changelog](https://github.com/rust-lang/libc/blob/0.2.186/CHANGELOG.md) - [Commits](https://github.com/rust-lang/libc/compare/0.2.183...0.2.186) Updates `libz-ng-sys` from 1.1.25 to 1.1.28 - [Release notes](https://github.com/rust-lang/libz-sys/releases) - [Commits](https://github.com/rust-lang/libz-sys/compare/1.1.25...1.1.28) Updates `libz-sys` from 1.1.25 to 1.1.28 - [Release notes](https://github.com/rust-lang/libz-sys/releases) - [Commits](https://github.com/rust-lang/libz-sys/compare/1.1.25...1.1.28) Updates `pkg-config` from 0.3.32 to 0.3.33 - [Changelog](https://github.com/rust-lang/pkg-config-rs/blob/master/CHANGELOG.md) - [Commits](https://github.com/rust-lang/pkg-config-rs/compare/0.3.32...0.3.33) Updates `portable-atomic-util` from 0.2.6 to 0.2.7 - [Release notes](https://github.com/taiki-e/portable-atomic-util/releases) - [Changelog](https://github.com/taiki-e/portable-atomic-util/blob/main/CHANGELOG.md) - [Commits](https://github.com/taiki-e/portable-atomic-util/compare/v0.2.6...v0.2.7) Updates `typenum` from 1.19.0 to 1.20.0 - [Release notes](https://github.com/paholg/typenum/releases) - [Changelog](https://github.com/paholg/typenum/blob/main/CHANGELOG.md) - [Commits](https://github.com/paholg/typenum/compare/v1.19.0...v1.20.0) --- updated-dependencies: - dependency-name: clap dependency-version: 4.6.1 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: rust-minor-patch - dependency-name: rayon dependency-version: 1.12.0 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: rust-minor-patch - dependency-name: cc dependency-version: 1.2.61 dependency-type: indirect update-type: version-update:semver-patch dependency-group: rust-minor-patch - dependency-name: clap_derive dependency-version: 4.6.1 dependency-type: indirect update-type: version-update:semver-patch dependency-group: rust-minor-patch - dependency-name: indexmap dependency-version: 2.14.0 dependency-type: indirect update-type: version-update:semver-minor dependency-group: rust-minor-patch - dependency-name: libbz2-rs-sys dependency-version: 0.2.3 dependency-type: indirect update-type: version-update:semver-patch dependency-group: rust-minor-patch - dependency-name: libc dependency-version: 0.2.186 dependency-type: indirect update-type: version-update:semver-patch dependency-group: rust-minor-patch - dependency-name: libz-ng-sys dependency-version: 1.1.28 dependency-type: indirect update-type: version-update:semver-patch dependency-group: rust-minor-patch - dependency-name: libz-sys dependency-version: 1.1.28 dependency-type: indirect update-type: version-update:semver-patch dependency-group: rust-minor-patch - dependency-name: pkg-config dependency-version: 0.3.33 dependency-type: indirect update-type: version-update:semver-patch dependency-group: rust-minor-patch - dependency-name: portable-atomic-util dependency-version: 0.2.7 dependency-type: indirect update-type: version-update:semver-patch dependency-group: rust-minor-patch - dependency-name: typenum dependency-version: 1.20.0 dependency-type: indirect update-type: version-update:semver-minor dependency-group: rust-minor-patch ... Signed-off-by: dependabot[bot] --- Cargo.lock | 54 +++++++++++++++++++++++++++--------------------------- Cargo.toml | 4 ++-- 2 files changed, 29 insertions(+), 29 deletions(-) diff --git a/Cargo.lock b/Cargo.lock index 25d9523..f814aea 100644 --- a/Cargo.lock +++ b/Cargo.lock @@ -203,9 +203,9 @@ dependencies = [ [[package]] name = "cc" -version = "1.2.58" +version = "1.2.61" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e1e928d4b69e3077709075a938a05ffbedfa53a84c8f766efbf8220bb1ff60e1" +checksum = "d16d90359e986641506914ba71350897565610e87ce0ad9e6f28569db3dd5c6d" dependencies = [ "find-msvc-tools", "shlex", @@ -234,9 +234,9 @@ dependencies = [ [[package]] name = "clap" -version = "4.6.0" +version = "4.6.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b193af5b67834b676abd72466a96c1024e6a6ad978a1f484bd90b85c94041351" +checksum = "1ddb117e43bbf7dacf0a4190fef4d345b9bad68dfc649cb349e7d17d28428e51" dependencies = [ "clap_builder", "clap_derive", @@ -256,9 +256,9 @@ dependencies = [ [[package]] name = "clap_derive" -version = "4.6.0" +version = "4.6.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1110bd8a634a1ab8cb04345d8d878267d57c3cf1b38d91b71af6686408bbca6a" +checksum = "f2ce8604710f6733aa641a2b3731eaa1e8b3d9973d5e3565da11800813f997a9" dependencies = [ "heck", "proc-macro2 1.0.106", @@ -495,9 +495,9 @@ dependencies = [ [[package]] name = "hashbrown" -version = "0.16.1" +version = "0.17.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "841d1cc9bed7f9236f321df977030373f4a4163ae1a7dbfe1a51a2c1a51d9100" +checksum = "4f467dd6dccf739c208452f8014c75c18bb8301b050ad1cfb27153803edb0f51" [[package]] name = "heck" @@ -507,12 +507,12 @@ checksum = "2304e00983f87ffb38b55b444b5e3b60a884b5d30c0fca7d82fe33449bbe55ea" [[package]] name = "indexmap" -version = "2.13.0" +version = "2.14.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "7714e70437a7dc3ac8eb7e6f8df75fd8eb422675fc7678aff7364301092b1017" +checksum = "d466e9454f08e4a911e14806c24e16fba1b4c121d1ea474396f396069cf949d9" dependencies = [ "equivalent", - "hashbrown 0.16.1", + "hashbrown 0.17.0", ] [[package]] @@ -553,15 +553,15 @@ checksum = "bbd2bcb4c963f2ddae06a2efc7e9f3591312473c50c6685e1f298068316e66fe" [[package]] name = "libbz2-rs-sys" -version = "0.2.2" +version = "0.2.3" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "2c4a545a15244c7d945065b5d392b2d2d7f21526fba56ce51467b06ed445e8f7" +checksum = "b3a6a8c165077efc8f3a971534c50ea6a1a18b329ef4a66e897a7e3a1494565f" [[package]] name = "libc" -version = "0.2.183" +version = "0.2.186" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b5b646652bf6661599e1da8901b3b9522896f01e736bad5f723fe7a3a27f899d" +checksum = "68ab91017fe16c622486840e4c83c9a37afeff978bd239b5293d61ece587de66" [[package]] name = "libm" @@ -571,9 +571,9 @@ checksum = "b6d2cec3eae94f9f509c767b45932f1ada8350c4bdb85af2fcab4a3c14807981" [[package]] name = "libz-ng-sys" -version = "1.1.25" +version = "1.1.28" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "89b6bd0c289b22f4973012fa91dfed9d5f4b633567bb26f9454fbf437817b499" +checksum = "be734b33b7bc6a42d92d23e25e69758f866cf564a88d0bf80866fcf5a52c2255" dependencies = [ "cmake", "libc", @@ -581,9 +581,9 @@ dependencies = [ [[package]] name = "libz-sys" -version = "1.1.25" +version = "1.1.28" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "d52f4c29e2a68ac30c9087e1b772dc9f44a2b66ed44edf2266cf2be9b03dafc1" +checksum = "fc3a226e576f50782b3305c5ccf458698f92798987f551c6a02efe8276721e22" dependencies = [ "cc", "libc", @@ -796,9 +796,9 @@ dependencies = [ [[package]] name = "pkg-config" -version = "0.3.32" +version = "0.3.33" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "7edddbd0b52d732b21ad9a5fab5c704c14cd949e5e9a1ec5929a24fded1b904c" +checksum = "19f132c84eca552bf34cab8ec81f1c1dcc229b811638f9d283dceabe58c5569e" [[package]] name = "portable-atomic" @@ -808,9 +808,9 @@ checksum = "c33a9471896f1c69cecef8d20cbe2f7accd12527ce60845ff44c153bb2a21b49" [[package]] name = "portable-atomic-util" -version = "0.2.6" +version = "0.2.7" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "091397be61a01d4be58e7841595bd4bfedb15f1cd54977d79b8271e94ed799a3" +checksum = "c2a106d1259c23fac8e543272398ae0e3c0b8d33c88ed73d0cc71b0f1d902618" dependencies = [ "portable-atomic", ] @@ -930,9 +930,9 @@ checksum = "60a357793950651c4ed0f3f52338f53b2f809f32d83a07f72909fa13e4c6c1e3" [[package]] name = "rayon" -version = "1.11.0" +version = "1.12.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "368f01d005bf8fd9b1206fb6fa653e6c4a81ceb1466406b81792d87c5677a58f" +checksum = "fb39b166781f92d482534ef4b4b1b2568f42613b53e5b6c160e24cfbfa30926d" dependencies = [ "either", "rayon-core", @@ -1175,9 +1175,9 @@ checksum = "22048bc95dfb2ffd05b1ff9a756290a009224b60b2f0e7525faeee7603851e63" [[package]] name = "typenum" -version = "1.19.0" +version = "1.20.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "562d481066bde0658276a35467c4af00bdc6ee726305698a55b86e61d7ad82bb" +checksum = "40ce102ab67701b8526c123c1bab5cbe42d7040ccfd0f64af1a385808d2f43de" [[package]] name = "unicode-ident" diff --git a/Cargo.toml b/Cargo.toml index 4ea8681..70027d6 100644 --- a/Cargo.toml +++ b/Cargo.toml @@ -10,9 +10,9 @@ description = "A tool to filter fastq files" [dependencies] bio = "3.0.0" -clap = { version = "4.6.0", features = ["derive"] } +clap = { version = "4.6.1", features = ["derive"] } crossbeam-channel = "0.5" -rayon = "1.7.0" +rayon = "1.12.0" approx = "0.5.1" minimap2 = "0.1.31" flate2 = { version = "1.1.9", features = [