This file should be abstracted away from the config.yaml. Currently, the config.yaml contains experimental data and pipeline info.
The experiment.yml file should specify the following:
- batch
- plate
- process (true/false)
- pipeline (this is new! - with a split of pipeline and data, we should have the ability to process different plates with different (and/or multiple) pipelines
This file should be abstracted away from the
config.yaml. Currently, theconfig.yamlcontains experimental data and pipeline info.The experiment.yml file should specify the following: