Currently if an exception is raised during task processing, IlluminaProcessor._worker will catch it and send an email to the address defined in to_addrs_on_error in the config. The same should happen if an exception reaches _proc_new_alignment, possibly also including what's currently caught in ProjectData.from_alignment for any problems when loading metadata. (Possibly just remove the except clause there and handle within IlluminaProcessor.)
Currently if an exception is raised during task processing,
IlluminaProcessor._workerwill catch it and send an email to the address defined into_addrs_on_errorin the config. The same should happen if an exception reaches_proc_new_alignment, possibly also including what's currently caught inProjectData.from_alignmentfor any problems when loading metadata. (Possibly just remove the except clause there and handle within IlluminaProcessor.)